[MouseBIRN] Log of /mbManagerIOPlugins

Revision 5012 - Directory Listing
Modified Wed Mar 2 00:49:05 2011 UTC (2 years, 2 months ago) by dlee

more feature additions for atlas editor;

Revision 4968 - Directory Listing
Modified Wed Jan 5 19:52:00 2011 UTC (2 years, 4 months ago) by dlee

added autoplay options to JLayerGUI2D;
core changes for opening raw images;

Revision 4961 - Directory Listing
Modified Sat Oct 9 00:04:29 2010 UTC (2 years, 7 months ago) by dlee

Major refactor of I/O code to read files:
added ReadImage_LOCI plugin to use loci_tools.jar to most of the heavy lifting for reading file formats;
updated HandleExtraFileTypes.java

Revision 4877 - Directory Listing
Modified Mon Jun 28 21:01:40 2010 UTC (2 years, 10 months ago) by noodlesvn

"v3.1_release"

Revision 4758 - Directory Listing
Modified Wed May 5 23:50:17 2010 UTC (3 years ago) by dlee

add .nii.gz and .nii.z support;
remove .lsm loading;
remove BioFormats loading;

Revision 4743 - Directory Listing
Modified Fri Apr 30 17:15:19 2010 UTC (3 years ago) by jeffb

Revision 4564 - Directory Listing
Modified Fri Mar 19 18:50:50 2010 UTC (3 years, 2 months ago) by dlee

cosmetic changes for mbat version 3.1 alpha labels/descriptions;
reverted JLayerImage2DEmbed::getLinkedObjectList() to previous behavior since cross-hairs disabled (TODO: refactor base layer);

Revision 4505 - Directory Listing
Modified Wed Mar 17 01:30:06 2010 UTC (3 years, 2 months ago) by dlee

mbManagerDocking: added getter for JIDE docking manager;
mbManagerIOPlugins: updated build.xml for new file structure for plugins dir;
ABA and JLayerImage2DEmbed: fixes for initial scaling (still need to fix reset xform);
mbMain: added splash screen

Revision 4053 - Directory Listing
Modified Fri Jul 24 17:27:47 2009 UTC (3 years, 9 months ago) by noodlesvn

"ctsi-demo"

Revision 3975 - Directory Listing
Modified Thu Jun 18 19:44:21 2009 UTC (3 years, 11 months ago) by nsane

1. Modified the caching functionality: Now system stores downloaded files in the same directory as .wslocal file
2. Refactored mbWorkspaceBase.
3. Updated mbProgressBar to display the progress bar value changes.

Revision 3947 - Directory Listing
Modified Tue Jun 9 00:01:18 2009 UTC (3 years, 11 months ago) by nsane

Added code to support caching while storing a workspace.

Revision 3936 - Directory Listing
Modified Wed May 27 01:31:08 2009 UTC (3 years, 11 months ago) by dlee

remove unused LOCI_reader plugin;

Revision 3918 - Directory Listing
Modified Wed May 20 02:36:09 2009 UTC (4 years ago) by noodlesvn

"20090519_beta-final-v3.0.1-3910"

Revision 3895 - Directory Listing
Modified Mon May 18 22:37:39 2009 UTC (4 years ago) by noodlesvn

Created folder remotely

Revision 3894 - Directory Listing
Modified Mon May 18 22:36:43 2009 UTC (4 years ago) by noodlesvn

Created folder remotely

Revision 3876 - Directory Listing
Modified Fri May 15 23:15:52 2009 UTC (4 years ago) by dlee

revert changes for Pipeline.jar;

Revision 3872 - Directory Listing
Modified Fri May 15 21:02:18 2009 UTC (4 years ago) by jeffb

Undo vertical flip that's now taken care of in Daren's layer.

Add don't-interpolate instructions for LargeVolumeAtlas, although this is probably redundant.

Revision 3809 - Directory Listing
Modified Thu May 7 21:32:41 2009 UTC (4 years ago) by dlee

added ontology/graph icon;
changed Analyze_Reader to conform with Nifti orientation standard;

Revision 3736 - Directory Listing
Modified Sun Apr 26 17:13:05 2009 UTC (4 years ago) by dlee

deleted unused Atlas_Reader.java;
added throwing of exceptions to atlas IO: LabelHierarchy, mbAtlas, mbManagerGraph;
added throwing of generic java.lang.Exception in JLayer.load() (TODO: decide if we still need all the other types of exceptions);

Revision 3723 - Directory Listing
Modified Thu Apr 23 22:50:43 2009 UTC (4 years ago) by dlee

major refactor for to JLayer.load() interface method to throw Exception for cleaner error handling;
update JViewportManager.loadObjects(), JLayerImage2D.load(), JLayerImage3D.load(), JLayerImage3DAtlas.load() to new API;
update NeuroTerrain and MBL plugins to compile;
change Analyze_Reader to gracefully handle unknown datatype;

Revision 3718 - Directory Listing
Modified Thu Apr 23 20:49:54 2009 UTC (4 years ago) by jeffb

Copy calibration logic from FileOpener to VirtualFileOpener; minor comments

Revision 3709 - Directory Listing
Modified Tue Apr 21 23:33:56 2009 UTC (4 years, 1 month ago) by dlee

upgrade ImageJ to 1.41o;

Revision 3690 - Directory Listing
Modified Tue Apr 21 01:27:46 2009 UTC (4 years, 1 month ago) by dlee

added mbConfiguration for getting/setting application paths;
added mbWorkspaceBase::createConfigurationPath() so each workspace will create a folder for saving preferences/settings for its tool plugins;

Revision 3682 - Directory Listing
Modified Mon Apr 20 17:13:21 2009 UTC (4 years, 1 month ago) by dlee

added loading of .img.gz and .img.z files from ZIP archive from URL;

Revision 3670 - Directory Listing
Modified Fri Apr 17 20:20:32 2009 UTC (4 years, 1 month ago) by jeffb

Factor out ImageJ extensions into mbManagerIO
Add support for orthogonal reslices
Fix vertical flip
Add support for large-volume atlases

Revision 3638 - Directory Listing
Modified Tue Apr 14 03:26:17 2009 UTC (4 years, 1 month ago) by dlee

changed loading of zip file from url by saving to tmp file

Revision 3607 - Directory Listing
Modified Fri Apr 3 20:01:00 2009 UTC (4 years, 1 month ago) by dlee

added support for loading Volume3D objects to JLayerImage3D;
added downloading ZIP archive from URL in Analyze_Reader plugin;

Revision 3538 - Directory Listing
Modified Mon Mar 30 12:52:59 2009 UTC (4 years, 1 month ago) by jeffb

Weed out more stack traversals; try to troubleshoot leveling problem; track signature change in JLayerImage3D.getOrthogonalSlices()

Revision 3435 - Directory Listing
Modified Fri Mar 13 15:30:06 2009 UTC (4 years, 2 months ago) by jeffb

Initial commit of Large_Analyze_Reader, incorporating VirtualFileOpener and MonolithicVirtualStack.  Modify build.xml to include it; modify HandleExtraFileTypes to recognize ".lhdr" extension and direct to Large_Analyze_Reader.

Revision 3311 - Directory Listing
Modified Thu Feb 26 23:02:02 2009 UTC (4 years, 2 months ago) by dlee

added support .atlas files (JLayerImage3DAtlas) - still incomplete;
redesigned loading of .atlas files (removed from ImageJ plugin; handled in JLayerImage3DAtlas);

Revision 3250 - Directory Listing
Modified Tue Feb 10 23:35:32 2009 UTC (4 years, 3 months ago) by Queenie

Fix the buildpath.

Revision 3195 - Directory Listing
Modified Tue Jan 27 23:43:35 2009 UTC (4 years, 3 months ago) by dlee

fixed loading of data from URL by checking MIME type for image/jpeg;

Revision 3189 - Directory Listing
Modified Tue Jan 27 00:47:29 2009 UTC (4 years, 3 months ago) by dlee

added handling of loading ABA .aff extension as jpegs in URLs

Revision 3174 - Directory Listing
Modified Fri Jan 23 23:14:19 2009 UTC (4 years, 3 months ago) by dlee

added reading of compressed Analyze images;

Revision 3157 - Directory Listing
Modified Tue Jan 13 23:54:02 2009 UTC (4 years, 4 months ago) by Queenie

Add the common library from common project

Revision 3151 - Directory Listing
Modified Tue Jan 13 01:19:51 2009 UTC (4 years, 4 months ago) by Queenie

Add the mbat_common library to the buildpath.

Revision 3150 - Directory Listing
Modified Tue Jan 13 01:17:17 2009 UTC (4 years, 4 months ago) by Queenie

parse Atlas file

Revision 3116 - Directory Listing
Modified Wed Jan 7 20:01:23 2009 UTC (4 years, 4 months ago) by dlee

added .atlas to default list in HandleExtraFileTypes

Revision 3086 - Directory Listing
Modified Fri Dec 19 18:21:39 2008 UTC (4 years, 5 months ago) by dlee

updated build.xml

Revision 3085 - Directory Listing
Modified Fri Dec 19 18:19:55 2008 UTC (4 years, 5 months ago) by dlee

added Atlas_Reader class;

Revision 3010 - Directory Listing
Modified Mon Nov 17 23:41:51 2008 UTC (4 years, 6 months ago) by dlee

Initial import.

Revision 3009 - Directory Listing
Modified Mon Nov 17 23:41:08 2008 UTC (4 years, 6 months ago) by dlee

Initial import.

Revision 3008 - Directory Listing
Added Mon Nov 17 23:40:47 2008 UTC (4 years, 6 months ago) by dlee

Initial import.